From 1bad63984d811a7bb5e3cbfa1d19eb7478c9199a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 10:28:18 +0000 Subject: [PATCH 01/12] Added contact for PRJNA670487: Sylvain Raffaele --- .../contacts/allContacts.xml | 27 ++++++++++++++++++- 1 file changed, 26 insertions(+), 1 deletion(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index dc39bfef..8db4b5af 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -26,7 +26,32 @@ - + + + sylvain.raffaele + Sylvain Raffaele + LIPME, INRAE, CNRS + sylvain.raffaele@inrae.fr +
28 chemin de borde rouge
+ Castanet tolosan + + 31320 + France + + + + stefan.kusch + Stefan Kusch + Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University + +
+ Aachen + + + Germany + + +>>>>>>> 3b6c2187 (Added contact for PRJNA670487: Sylvain Raffaele) d.perets D. Perets From 2664ef1afe2e50f5a1031a7de534fc4e02783ce4 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 11:55:12 +0000 Subject: [PATCH 02/12] Removed (First author) contact from allContacts.xml - Contact not referenced in PRJNA670487 presenter - Maintaining only sylvain.raffaele for this dataset --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 8db4b5af..de9cab6c 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -39,17 +39,6 @@ France - - stefan.kusch - Stefan Kusch - Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University - -
- Aachen - - - Germany - >>>>>>> 3b6c2187 (Added contact for PRJNA670487: Sylvain Raffaele) From 19cfc203f26be8e6b28181d74b426cb8bfd1eec3 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 26 Feb 2026 14:44:37 +0000 Subject: [PATCH 03/12] Updated contact for PRJNA670487: Sylvain Raffaele --- Model/lib/xml/datasetPresenters/contacts/allContacts.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index de9cab6c..048f24f6 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -30,9 +30,9 @@ sylvain.raffaele Sylvain Raffaele - LIPME, INRAE, CNRS + Laboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France sylvain.raffaele@inrae.fr -
28 chemin de borde rouge
+
Castanet tolosan 31320 From 7af99c34e3f55acfafcbb9b9af73078c6cd72754 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 11:30:49 +0100 Subject: [PATCH 04/12] Add contacts for Botrytis cinerea (PRJNA915611) RNA-seq dataset. - Added contact Xuncheng Wang, 1706380435@pku.edu.cn, Peking Universit, Beijing, Chin for PRJNA915611 --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 048f24f6..f2c628fd 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40787,4 +40787,28 @@ Academy of Sciences + + xuncheng.wang + Xuncheng Wang + Peking University + 1706380435@pku.edu.cn +
+ Beijing + + + China + + + + mei.liu + Mei Liu + Peking University + +
+ Beijing + + + China + + From 0da0f5075ec9668da4d8af40ce03f1dfcb1c7db8 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 12:32:14 +0100 Subject: [PATCH 05/12] Add Nathalie Poussereau contact for Botrytis cinerea RNA-seq (PRJNA1104610) dataset. - Dataset: PacC transcription factor pH-responsive gene regulation study - PMID: 39385086 - Organism: Botrytis cinerea B05.10 - Added nathalie.poussereau contact to allContacts.xml - Email: nathalie.poussereau@univ-lyon1.fr --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index f2c628fd..c7893ff1 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40811,4 +40811,16 @@ Academy of Sciences China + + nathalie.poussereau + Nathalie Poussereau + Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France + nathalie.poussereau@univ-lyon1.fr +
+ Villeurbanne + + 69100 + France + + From 8b32990c774aa1a1eebeaffe7b91ef8beb0d1428 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 09:57:11 +0100 Subject: [PATCH 06/12] Remove Nathalie Poussereau contact for PRJNA1104610 --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index c7893ff1..6e568824 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40811,16 +40811,5 @@ Academy of Sciences China - - nathalie.poussereau - Nathalie Poussereau - Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France - nathalie.poussereau@univ-lyon1.fr -
- Villeurbanne - - 69100 - France - From aecea93cdffa1cb823da48f368ef73132e597ee3 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 10:50:20 +0100 Subject: [PATCH 07/12] Add Tsutomu Arie contact for Fusarium oxysporum (PRJNA662919) RNA-seq dataset. - Dataset: Morphological differentiation transcriptomics - PMID: 34108627 - Organism: Fusarium oxysporum isolate Cong:1-1 - Added Tsutomu Arie, arie@cc.tuat.ac.jp, Osaka Prefecture University, Japan --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 6e568824..042881e2 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40811,5 +40811,16 @@ Academy of Sciences China + + tsutomu.arie + Tsutomu Arie + Osaka Prefecture University + +
+ + + + Japan + From d62bddae6f413b3f325af6c12f313d55956d0cf2 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 14:53:31 +0100 Subject: [PATCH 08/12] =?UTF-8?q?Add=20Silvia=20Restrepo=20contact=20for?= =?UTF-8?q?=20Fusarium=20oxysporum=20(PRJNA323849,=20GSE82060)=20RNA-seq?= =?UTF-8?q?=20dataset.=20-=20Dataset:=20Antifungal=20drug=20response=20tra?= =?UTF-8?q?nscriptomics=20(GSE82060)=20-=20Organism:=20Fusarium=20oxysporu?= =?UTF-8?q?m=20strain=20FMR9788=20-=20Added=20silvia.restrepo=20contact=20?= =?UTF-8?q?to=20allContacts.xml=20-=20Email:=20srestrep@uniandes.edu.co=20?= =?UTF-8?q?-=20Affiliation:=20LAMFU=20Lab,=20Department=20of=20Biology,=20?= =?UTF-8?q?Universidad=20de=20los=20Andes,=20Bogot=C3=A1,=20Colombia?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 042881e2..39053248 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40823,4 +40823,16 @@ Academy of Sciences Japan + + silvia.restrepo + Silvia Restrepo + Department of Biology, LAMFU Lab, Universidad de los Andes, Bogotá, Colombia + srestrep@uniandes.edu.co +
+ Bogotá + + + Colombia + + From c33d878444389f12218e3c10ff02621cf66be83d Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 15:35:04 +0100 Subject: [PATCH 09/12] Add Shanxi Agricultural University contact for Fusarium oxysporum (PRJNA374476) RNA-seq dataset. - Dataset: Wild-type vs DES mutagenesis mutant transcriptome - Organism: Fusarium oxysporum - Added Shanxi Agricultural University (SAU) contact to allContacts.xml - Institution: Shanxi Agricultural University --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 39053248..4c3ba08a 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40835,4 +40835,16 @@ Academy of Sciences Colombia + + Shanxi Agricultural University (SAU) + Shanxi Agricultural University (SAU) + Shanxi Agricultural University + +
+ Taigu + + + China + + From 9635d19d584db076b6b9c1441d885774acc7f366 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 17:47:20 +0100 Subject: [PATCH 10/12] Add Javier Avalos contact for Fusarium oxysporum (PRJNA419820, GSE107342) RNA-seq dataset. - Dataset: CarS and light response transcriptomics - Organism: Fusarium oxysporum f. sp. lycopersici - Added j.avalos contact to allContacts.xml - Email: (Department of Genetics, Faculty of Biology, University of Seville, Spain) --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4c3ba08a..ea1f113e 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40847,4 +40847,16 @@ Academy of Sciences China + + j.avalos + Javier Avalos + Department of Genetics, Faculty of Biology, University of Seville, E-41012 Seville, Spain + +
+ Seville + + 41012 + Spain + + From fa5a5b56ffdf13bfd63f43fa2c815eb7ca45e7ab Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 13 Apr 2026 12:50:59 +0100 Subject: [PATCH 11/12] Add Yunnan Academy of Tobacco Agricultural Sciences contact for Fusarium oxysporum (PRJNA859524) RNA-seq dataset. - Dataset: Fusarium oxysporum strain transcriptome on tobacco - Organism: Fusarium oxysporum (Fo-H, Fo-M, Fo-L strains) - Added Submitting Institution Yunnan Academy of Tobacco Agricultural Sciences (YATAS) contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index ea1f113e..1695ffdf 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40859,4 +40859,16 @@ Academy of Sciences Spain + + yunnan_tobacco_academy + Yunnan Academy of Tobacco Agricultural Sciences (YATAS) + Yunnan Academy of Tobacco Agricultural Sciences (YATAS) + +
+ Yunnan + + + China + + From fd1d4f405711f7bdb28c41f8ae59fe0ac3303241 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 13 Apr 2026 14:55:22 +0100 Subject: [PATCH 12/12] Add Qiongtai Normal University contact for Fusarium oxysporum f. sp. cubense RNA-seq (PRJNA531386) dataset. - Dataset: MAPK signaling pathway investigation in Fusarium oxysporum f. sp. cubense - Organism: Fusarium oxysporum f. sp. cubense strains (XJZ2, SLT2) - Added submitter Qiongtai Normal University contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 1695ffdf..a92f70b2 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -3,6 +3,18 @@ + + qiongtai.normal.university + Qiongtai Normal University + Qiongtai Normal University + +
+ Haikou + + + China + + TODO Please add Contact Info