To reproduce, please run the notebook from this PR, which doesn't require any data (it uses the one from squidpy).
The code cell
fig, axs = plt.subplots(1, 3, figsize=(18, 5))
sdata.pl.render_images().pl.render_shapes(color="array_row").pl.show(ax=axs[0], title="Row")
sdata.pl.render_images().pl.render_shapes(color="array_col").pl.show(ax=axs[1], title="Col")
sdata.pl.render_images().pl.render_shapes(color="mt-Cytb").pl.show(ax=axs[2], title="mt-Cytb")
leads to me to these warnings. Here I would like to report the one on the clipped data range.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
@timtreis reported that he cannot reproduce.
To reproduce, please run the notebook from this PR, which doesn't require any data (it uses the one from
squidpy).The code cell
leads to me to these warnings. Here I would like to report the one on the clipped data range.
@timtreis reported that he cannot reproduce.