Antibody array WDK: inject EDA attribute and gene table templates#114
Open
Antibody array WDK: inject EDA attribute and gene table templates#114
Conversation
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
…ord table references - Inject 5 templates for transcript record attributes and gene record graphs - Add 2 WDK model references to GeneRecordClass for table definitions - EdaAntibodyArrayDatasets table - EdaAntibodyArrayGraphsDataTable table This enables: 1. Transcript record columns (normalized intensities per sample/gene) 2. Gene record graph table queries
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
AntibodyArrayEDAStudy.javato inject 5 new DST templates:antibodyArrayEdaAttributeQueriesNumeric— normalized intensity transcript columnsantibodyArrayEdaAttributeRef— transcript record attribute query referenceantibodyArrayEdaAttributeCategory— ontology entriesantibodyArrayEdaGeneTableSql— gene table dataset UNIONantibodyArrayDataTableGeneTableSql— gene table data UNIONEdaAntibodyArrayDatasetsandEdaAntibodyArrayGraphsDataTableonGeneRecordClassContext
The template content lives in
ApiCommonModel/antibodyArray.dst. The transcript crosstab pivots onsample_stable_id(one column per sample/gene), distinct from the Phenotype pattern which pivots onattribute_stable_id.Test Plan
Companion PR: VEuPathDB/ApiCommonModel#177
🤖 Generated with Claude Code