Issues · malariagen/malariagen-data-python · GitHub

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sys.setrecursionlimit(10_000) in hapclust/dipclust Permanently Alters Global Python State

#1305

· kunal-10-cloud opened

on Apr 15, 2026

Cloud Storage Access (GCS/S3) Has No Retry, Backoff, or Timeout Configuration

#1303

· khushthecoder opened

on Apr 15, 2026

CI Coverage Workflow Has Two Blind Spots — Excludes Root Modules and Uses Outdated Codecov Action

#1301

· kunal-10-cloud opened

on Apr 15, 2026

Integration Test and Notebook CI Workflows Use Hardcoded GCS Cache Key From September 2024

#1296

· kunal-10-cloud opened

on Apr 14, 2026

Unsanitized User Input Passed to `DataFrame.eval()` Enables Arbitrary Code Execution

#1292

· kunal-10-cloud opened

on Apr 14, 2026

No Public API to Clear or Inspect In-Memory Caches — Users Cannot Reclaim Memory in Long-Running Sessions

#1289

· khushthecoder opened

on Apr 13, 2026

`diversity_stats` doesn't have a `max_cohort_size` parameter

#1288

· jonbrenas opened

on Apr 13, 2026

fix: geneset() and snp_dataset() are deprecated but emit no DeprecationWarning

#1285

· Tanisha127 opened

on Apr 12, 2026

snp_calls_to_vcf() silently drops requested FORMAT fields when underlying data arrays don't exist

#1283

· Yashsingh045 opened

on Apr 10, 2026

snp_calls_to_vcf() — Python-level per-sample loop creates severe performance bottleneck for large cohorts

#1280

· khushthecoder opened

on Apr 10, 2026

S3 references in the docstring for Pf8

#1279

· jonbrenas opened

on Apr 8, 2026

geneset() and snp_dataset() are deprecated but don't warn users

#1273

· ZiadXI opened

on Apr 3, 2026